Regardless of which option you choose, the journey to El Nido is definitely worth it. Once you arrive, you'll be greeted by stunning views and endless opportunities for adventure and relaxation. So pack your bags and get ready for a memorable trip to El Nido!
Flying is still the fastest and most convenient way to reach El Nido, but flight routes in the Philippines have recently changed.
As of March 29, 2026, direct Manila–El Nido flights are no longer operating. Travelers now have several alternative routes depending on their itinerary, budget, and preferred airports.
The Most Convenient Route: International Travelers Skip Manila. Clark → El Nido
If possible, the easiest option is to avoid Manila entirely.
Many international travelers now fly directly to Cebu (CEB) or Clark (CRK), then take a short domestic direct flight to El Nido. This route is often smoother, less stressful, and avoids Manila traffic and airport transfers. Flights from Cebu and Clark to El Nido take approximately 1 hour.
Direct Flights from Other Philippine Islands
El Nido is also connected by direct flights from several popular destinations in the Philippines, including Cebu, Clark, Boracay, Coron, and Bohol.
Via Manila → Clark → El Nido
If you arrive in Manila, the recommended option is to continue to Clark Airport (CRK) before flying to El Nido.
From NAIA Terminal 3, travelers can take the Genesis shuttle bus to Clark Airport. The journey usually takes between 1.5 and 3 hours depending on traffic. Clark now offers multiple daily direct flights to El Nido and has become one of the main gateways to Northern Palawan.
Via Manila → Puerto Princesa → El Nido
Another popular alternative is flying from Manila to Puerto Princesa (PPS), followed by a van or bus transfer to El Nido.
The overland trip from Puerto Princesa to El Nido takes around 5 hours. Shared vans are the most common option, while Cherry Bus offers a more spacious and comfortable journey.
This route is often a good choice for travelers looking for cheaper flights or those planning to explore other parts of Palawan along the way.
By land -van or bus
Another option is to take a bus from Puerto Princesa to El Nido. The bus ride takes around 6-8 hours and buses depart from the San Jose Terminal in Puerto Princesa and arrive at the El Nido bus terminal. You can book bus tickets at the terminal.
Regardless of which option you choose, the journey from Puerto Princesa to El Nido is scenic and offers stunning views of the Palawan countryside.
By sea -ferry
There are several ferry companies that offer daily trips from Coron to El Nido such as Phimal Fast Ferry Inc or Montenegro Shipping Lines. The ferry ride takes around 3-5 hours depending on weather conditions and offers stunning views of the Palawan islands. You can book ferry tickets online or at the ferry terminal in Coron and El Nido.
Another popular way to arrive in El Nido by sea is through a multi-day Coron to El Nido island-hopping tour. Coron–El Nido expeditions travel through remote islands and beaches over several days and finish in El Nido, combining transportation with island exploration along the way. El Nido–Coron expeditions are also available for travelers starting their journey in El Nido and continuing north toward Coron.
Travel Reminder
Transportation schedules in the Philippines can change frequently depending on weather, airline operations, and seasonality. We always recommend confirming schedules directly with airlines or transport operators before booking your trip.
Traveling to El Nido by sea is a unique and memorable experience that offers breathtaking views of the Palawan islands. Make sure to bring sunscreen, a hat, and a camera to capture the stunning scenery along the way!
